Changes between Version 60 and Version 61 of ImplementAnalysislseik

Timestamp:

Jun 3, 2025, 5:25:48 PM (2 days ago)

Author:

lnerger

Comment:

--

ImplementAnalysislseik

@@ -52 +52 @@
 == `PDAF_assimilate_lseik` ==
 
-The general espects of the filter-specific routines `PDAF_assimilate_*` have been described on the page [ModifyModelforEnsembleIntegration Modification of the model code for the ensemble integration]. 
+The general espects of the filter-specific routines `PDAF_assimilate_*` have been described on the page [wiki:OnlineModifyModelforEnsembleIntegration_PDAF3 Modification of the model code for the ensemble integration]. 
 The interface for the routine `PDAF_assimilate_lseik` contains several routine names for routines that operate on the local analysis domains (marked by `_l` at the end of the routine name). In addition, there are names for routines that consider all available observations required to perform local analyses with LSEIK within some sub-domain of a domain-decomposed model (marked by `_f` at the end of the routine name). In case of a serial execution of the assimilation program, these will be all globally available observations. However, if the program is executed with parallelization, this might be a smaller set of observations. 
 
@@ -68 +68 @@
 }}}
 with the following arguments:
- * [#U_collect_statecollect_state_pdaf.F90 U_collect_state]: The name of the user-supplied routine that initializes a state vector from the array holding the ensemble of model states from the model fields. This is basically the inverse operation to `U_distribute_state` used in [ModifyModelforEnsembleIntegration#PDAF_get_state PDAF_get_state] and also here.
+ * [#U_collect_statecollect_state_pdaf.F90 U_collect_state]: The name of the user-supplied routine that initializes a state vector from the array holding the ensemble of model states from the model fields. This is basically the inverse operation to `U_distribute_state` used in [wiki:OnlineModifyModelforEnsembleIntegration_PDAF3#PDAF_get_state PDAF_get_state] and also here.
  * [#U_distribute_statedistribute_state_pdaf.F90 U_distribute_state]:  The name of a user supplied routine that initializes the model fields from the array holding the ensemble of model state vectors.
  * [#U_init_dim_obs_finit_dim_obs_f_pdaf.F90 U_init_dim_obs_f]: The name of the user-supplied routine that provides the size of the full observation vector
@@ -93 +93 @@
 == `PDAF_put_state_lseik` ==
 
-When the 'flexible' implementation variant is chosen for the assimilation system, the routine `PDAF_put_state_lseik` has to be used instead of `PDAF_assimilate_lseik`. The general aspects of the filter specific routines `PDAF_put_state_*` have been described on the page [ModifyModelforEnsembleIntegration Modification of the model code for the ensemble integration]. The interface of the routine is identical with that of `PDAF_assimilate_lseik` with the exception the specification of the user-supplied routines `U_distribute_state` and `U_next_observation` are missing. 
+When the 'flexible' implementation variant is chosen for the assimilation system, the routine `PDAF_put_state_lseik` has to be used instead of `PDAF_assimilate_lseik`. The general aspects of the filter specific routines `PDAF_put_state_*` have been described on the page wiki:OnlineModifyModelforEnsembleIntegration_PDAF3 Modification of the model code for the ensemble integration]. The interface of the routine is identical with that of `PDAF_assimilate_lseik` with the exception the specification of the user-supplied routines `U_distribute_state` and `U_next_observation` are missing. 
 
 The interface when using the LSEIK filter is the following:
@@ -106 +106 @@
 == User-supplied routines ==
 
-Here, all user-supplied routines are described that are required in the call to `PDAF_assimilate_lseik`. For some of the generic routines, we link to the page on [ModifyModelforEnsembleIntegration modifying the model code for the ensemble integration].
+Here, all user-supplied routines are described that are required in the call to `PDAF_assimilate_lseik`. For some of the generic routines, we link to the page on [wiki:OnlineModifyModelforEnsembleIntegration_PDAF3 modifying the model code for the ensemble integration].
 
 To indicate user-supplied routines we use the prefix `U_`. In the tutorials in `tutorial/` and in the template directory `templates/` these routines exist without the prefix, but with the extension `_pdaf`. The files are named correspondingly. In the section titles below we provide the name of the template file in parentheses.
@@ -115 +115 @@
 
 This routine is independent from the filter algorithm used.
-See the mape on [InsertAnalysisStep#U_collect_statecollect_state_pdaf.F90 inserting the analysis step] for the description of this routine.
+See the mape on [wiki:OnlineModifyModelforEnsembleIntegration_PDAF3#U_collect_statecollect_state_pdaf.F90 inserting the analysis step] for the description of this routine.
 
 === `U_distribute_state` (distribute_state_pdaf.F90) ===
 
 This routine is independent of the filter algorithm used.
-See the page on [InsertAnalysisStep#U_distribute_statedistribute_state_pdaf.F90 inserting the analysis step] for the description of this routine.
+See the page on [wiki:OnlineModifyModelforEnsembleIntegration_PDAF3#U_distribute_statedistribute_state_pdaf.F90 inserting the analysis step] for the description of this routine.
 
 
@@ -206 +206 @@
 === `U_prepoststep` (prepoststep_ens_pdaf.F90) ===
 
-This routine can be identical to that used for the global SEIK filter, which has already been described on the [ModifyModelforEnsembleIntegration#U_prepoststepprepoststep_ens_pdaf.F90 page on modifying the model code for the ensemble integration]. For completeness, the description is repeated:
+This routine can be identical to that used for the global SEIK filter, which has already been described on the [wiki:OnlineModifyModelforEnsembleIntegration_PDAF3#U_prepoststepprepoststep_ens_pdaf.F90 page on modifying the model code for the ensemble integration]. For completeness, the description is repeated:
 
 The interface of the routine is identical for all filters. However, the particular operations that are performed in the routine can be specific for each filter algorithm. Here, we exemplify the interface on the example of the SEIK filter.
@@ -446 +446 @@
 
 This routine is independent of the filter algorithm used.
-See the page on [InsertAnalysisStep#U_next_observationnext_observation_pdaf.F90 inserting the analysis step] for the description of this routine.
+See the page on [wiki:OnlineModifyModelforEnsembleIntegration_PDAF3#U_next_observationnext_observation_pdaf.F90 inserting the analysis step] for the description of this routine.