Changes between Version 41 and Version 42 of ImplementAnalysisseik


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Timestamp:
May 5, 2014, 1:42:49 PM (6 years ago)
Author:
lnerger
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  • ImplementAnalysisseik

    v41 v42  
    1111<li><a href="ImplementationofAnalysisStep">Implementation of the analysis step</a></li>
    1212<ol>
     13<li><a href="ImplementAnalysisestkf">Implementation for ESTKF</a></li>
     14<li><a href="ImplementAnalysislestkf">Implementation for LESTKF</a></li>
     15<li><a href="ImplementAnalysisetkf">Implementation for ETKF</a></li>
     16<li><a href="ImplementAnalysisletkf">Implementation for LETKF</a></li>
    1317<li>Implementation for SEIK</li>
    1418<li><a href="ImplementAnalysislseik">Implementation for LSEIK</a></li>
    15 <li><a href="ImplementAnalysisetkf">Implementation for ETKF</a></li>
    16 <li><a href="ImplementAnalysisletkf">Implementation for LETKF</a></li>
    1719<li><a href="ImplementAnalysisseek">Implementation for SEEK</a></li>
    1820<li><a href="ImplementAnalysisenkf">Implementation for EnKF</a></li>
    19 <li><a href="ImplementAnalysisestkf">Implementation for ESTKF</a></li>
    20 <li><a href="ImplementAnalysislestkf">Implementation for LESTKF</a></li>
    2121</ol>
    2222<li><a href="AddingMemoryandTimingInformation">Memory and timing information</a></li>
     
    2929== Overview ==
    3030
    31 For the analysis step of the SEIK filter different operations related to the observations are needed. These operations are requested by PDAF by calling user-supplied routines. Intentionally, the operations are split into separate routines in order to keep the operations rather elementary. This procedure should simplify the implementation. The names of the required routines are specified in the call to the routine `PDAF_put_state_seik` that was discussed before. With regard to the parallelization, all these routines are executed by the filter processes (`filterpe=.true.`) only.
    32 
    33 For completeness we discuss here all user-supplied routines that are specified in the interface to PDAF_put_state_seik. Thus, some of the user-supplied routines that are explained on the page explaining the modification of the model code for the ensemble integration are repeated here.
     31For the analysis step of the SEIK filter different operations related to the observations are needed. These operations are requested by PDAF by calling user-supplied routines. Intentionally, the operations are split into separate routines in order to keep the operations rather elementary. This procedure should simplify the implementation. The names of the required routines are specified in the call to the routine `PDAF_assimilate_seik` (or `PDAF_put_state_seik`) that was discussed before. With regard to the parallelization, all these routines are executed by the filter processes (`filterpe=.true.`) only.
     32
     33For completeness we discuss here all user-supplied routines that are specified in the interface to PDAF_assimialte_seik. Thus, some of the user-supplied routines that are explained on the page explaining the modification of the model code for the ensemble integration are repeated here.
    3434
    3535The SEIK filter and the ETKF (Ensemble Transform Kalman Filter) are very similar. For this reason, the interface to the user-supplied routines is almost identical. Depending on the implementation it can be possible to use identical routines for the SEIK filter and the ETKF. Differences are marked in the text below.
    3636
    37 == `PDAF_put_state_seik` ==
    38 
    39 The general espects of the filter specific routines `PDAF_put_state_*` have been described on the page [ModifyModelforEnsembleIntegration Modification of the model code for the ensemble integration]. Here, we list once more the full interface. Subsequently, the full set of user-supplied routines specified in the call to `PDAF_put_state_seik` is explained.
     37== `PDAF_assimilate_seik` ==
     38
     39The general aspects of the filter specific routines `PDAF_assimilate_*` have been described on the page [ModifyModelforEnsembleIntegration Modification of the model code for the ensemble integration] and its sub-page on [InsertAnalysisStep inserting the analysis step]. The routine is used in the fully-parallel implementation variant of the data assimilation system. When the 'flexible' implementation variant is used, the routines `PDAF_put_state_*' is used as described further below. Here, we list once more the full interface of the routine. Subsequently, the full set of user-supplied routines specified in the call to `PDAF_assimilate_seik` is explained.
    4040
    4141The interface when using the SEIK filter is the following:
    4242{{{
    43   SUBROUTINE PDAF_put_state_seik(U_collect_state, U_init_dim_obs, U_obs_op, &
    44                                  U_init_obs, U_prepoststep, U_prodRinvA, U_init_obsvar, status)
     43  SUBROUTINE PDAF_assimilate_seik(U_collect_state, U_distribute_state, U_init_dim_obs, &
     44                                 U_obs_op, U_init_obs, U_prepoststep, U_prodRinvA, &
     45                                 U_init_obsvar, U_next_observation, status)
    4546}}}
    4647with the following arguments:
    4748 * [#U_collect_statecollect_state_pdaf.F90 U_collect_state]: The name of the user-supplied routine that initializes a state vector from the array holding the ensemble of model states from the model fields. This is basically the inverse operation to `U_distribute_state` used in `PDAF_get_state`
     49 * [#U_distribute_statedistribute_state_pdaf.F90 U_distribute_state]:  The name of a user supplied routine that initializes the model fields from the array holding the ensemble of model state vectors.
    4850 * [#U_init_dim_obsinit_dim_obs_pdaf.F90 U_init_dim_obs]: The name of the user-supplied routine that provides the size of observation vector
    4951 * [#U_obs_opobs_op_pdaf.F90 U_obs_op]: The name of the user-supplied routine that acts as the observation operator on some state vector
     
    5254 * [#U_prodRinvAprodrinva_pdaf.F90 U_prodRinvA]: The name of the user-supplied routine that computes the product of the inverse of the observation error covariance matrix with some matrix provided to the routine by PDAF. This operation occurs during the analysis step of the SEIK filter.
    5355 * [#U_init_obsvarinit_obsvar_pdaf.F90 U_init_obsvar]: The name of the user-supplied routine that provides a mean observation error variance to PDAF (This routine will only be executed, if an adaptive forgetting factor is used)
    54  * `status`: The integer status flag. It is zero, if `PDAF_put_state_seik` is exited without errors.
     56 * [#U_next_observationnext_observation.F90 U_next_observation]: The name of a user supplied routine that initializes the variables `nsteps`, `timenow`, and `doexit`. The same routine is also used in `PDAF_get_state`.
     57 * `status`: The integer status flag. It is zero, if `PDAF_assimilate_seik` is exited without errors.
     58
     59== `PDAF_put_state_seik` ==
     60
     61When the 'flexible' implementation variant is chosen for the assimilation system, the routine `PDAF_put_state_seik` has to be used instead of `PDAF_assimilate_seik`. The general aspects of the filter specific routines `PDAF_put_state_*` have been described on the page [ModifyModelforEnsembleIntegration Modification of the model code for the ensemble integration]. The interface of the routine is identical with that of `PDAF_assimilate_seik` with the exception the specification of the user-supplied routines `U_distribute_state` and `U_next_observation` are missing.
     62
     63The interface when using the SEIK filter is the following:
     64{{{
     65  SUBROUTINE PDAF_put_state_seik(U_collect_state, U_init_dim_obs, U_obs_op, &
     66                                 U_init_obs, U_prepoststep, U_prodRinvA, U_init_obsvar, status)
     67}}}
    5568
    5669
    5770== User-supplied routines ==
    5871
    59 Here all user-supplied routines are described that are required in the call to `PDAF_put_state_seik`. For some of the generic routines, we link to the page on [ModifyModelforEnsembleIntegration modifying the model code for the ensemble integration].
     72Here all user-supplied routines are described that are required in the call to `PDAF_assimilate_seik`. For some of the generic routines, we link to the page on [ModifyModelforEnsembleIntegration modifying the model code for the ensemble integration].
    6073
    6174To indicate user-supplied routines we use the prefix `U_`. In the template directory `templates/` as well as in the example implementation in `testsuite/src/dummymodel_1D` these routines exist without the prefix, but with the extension `_pdaf.F90`. In the section titles below we provide the name of the template file in parentheses.
     
    6780
    6881This routine is independent of the filter algorithm used.
    69 See the page [ModifyModelforEnsembleIntegration#U_collect_statecollect_state.F90 modifying the model code for the ensemble integration] for the description of this routine.
     82See the page on [InsertAnalysisStep#U_collect_statecollect_state_pdaf.F90 inserting the analysis step] for the description of this routine.
     83
     84
     85=== `U_distribute_state` (distribute_state_pdaf.F90) ===
     86
     87This routine is independent of the filter algorithm used.
     88See the page on [InsertAnalysisStep#U_distribute_statedistribute_state_pdaf.F90 inserting the analysis step] for the description of this routine.
    7089
    7190
     
    214233
    215234
     235=== `U_next_observation` (next_observation_pdaf.F90) ===
     236
     237This routine is independent of the filter algorithm used.
     238See the page on [InsertAnalysisStep#U_next_observationnext_observation_pdaf.F90 inserting the analysis step] for the description of this routine.
     239
     240
    216241== Execution order of user-supplied routines ==
    217242
    218 For the SEIK filter, the user-supplied routines are essentially executed in the order they are listed in the interface to `PDAF_put_state_seik`. The order can be important as some routines can perform preparatory work for later routines. For example, `U_init_dim_obs` can prepare an index array that provides the information for executing the observation operator in `U_obs_op`.
     243For the SEIK filter, the user-supplied routines are essentially executed in the order they are listed in the interface to `PDAF_assimilate_seik`. The order can be important as some routines can perform preparatory work for later routines. For example, `U_init_dim_obs` can prepare an index array that provides the information for executing the observation operator in `U_obs_op`.
    219244
    220245Before the analysis step is called the following routine is executed:
     
    231256 1. [#U_prepoststepprepoststep_ens_pdaf.F90 U_prepoststep] (Call to operate on the analysis ensemble, called with (positive) value of the time step)
    232257
     258In case of the routine `PDAF_assimilate_estkf`, the following routines are executed after the analysis step:
     259 1. [#U_distribute_statedistribute_state_pdaf.F90 U_distribute_state]
     260 1. [#U_next_observationnext_observation_pdaf.F90 U_next_observation]
     261